rs31567046 SNP Detail

Summary

• ID
  rs31567046
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172117604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGACT TCTATCATGG AAATAGTATT
  Y
  AATATACAGT GGCTATAAAA TGACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss49752434	NES13029389	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	C		C		C	C		C	C	T
ss120008650	PARCsnp_1.18403	PARC_SEQ	INBRED	f	SNP						C		T
ss120011736	PARCsnp_1.08135	PARC_SEQ	INBRED	f	SNP						C		T
ss146186746	ENSMUSSNP734606	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					T
ss320123910	CHEV_1_174220168	CHEVERUD	SCREENING_POP	f	SNP											T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs31567046					SNP	T	T	T	T	C	C	C	T	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752434	NES13029389	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172117604 () rs orientation: forward

Symbol	Name	Function Class
Atp1a2	ATPase, Na+/K+ transporting, alpha 2 polypeptide	within coordinates
Gm39704	predicted gene, 39704	743 bp upstream
Gm57554	predicted gene, 57554	within coordinates
Tssr15205	transcription start site region 15205	639 bp upstream
Tssr15206	transcription start site region 15206	1286 bp downstream