rs31567335 SNP Detail

Summary

• ID
  rs31567335
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172152314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGTAGGGA AGGAGAGGCC
  ACCGGGGCCT CTGCAGGGAG AAGGCCTGAG AAGCAGAGGT AGGGCTTGGG GGAGTAGGGA
  TAGGTGCAAA GTGGAGGCAG AGGCAGAGGG GGAAGAGAAG GCAGATGAAA AAGTCCCTGA
  TAGAAACCTG TCCGAGATTG TGTCAGAGAG AGGGACAGCG CAGAGACAGA GGGAGCAGTG
  Y
  GGAATGGGCA TGGGCTAGAA CCAGCCTAGT TGGAGTGAAG GAGGAGAGGG GAGTGGGAAG
  ACCTGAGGTG GCCATGGAGA AGATGATGTT TTTGTCTAGG CCCAGGAGCC AGGTTTCAAG
  GCTAGCAGCA GGGAGCTAGC CTGTCCGTAG CAGCTCCGCA GCTCCTCCTA GTGGCCTCTT
  GGTTCACCTG CGTCTTCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49752245	NES13029276	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T		C	T	C	C		C	C	T		T
ss120009165	PARCsnp_1.18661	PARC_SEQ	INBRED	f	SNP							C		T
ss120012370	PARCsnp_1.08452	PARC_SEQ	INBRED	f	SNP							C		T
ss146187954	ENSMUSSNP3875238	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss320124217	CHEV_1_174254878	CHEVERUD	SCREENING_POP	f	SNP												T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31567335					SNP	T	T	T	T	C	T	C	C	T	C	C	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752245	NES13029276	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172152314 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1043	CpG island 1043	797 bp proximal
Gm36937	predicted gene, 36937	1086 bp downstream
Gm70847	predicted gene, 70847	1533 bp upstream
Kcnj9	potassium inwardly-rectifying channel, subfamily J, member 9	within coordinates
Rr423524	regulatory region 423524	within coordinates
Rr423525	regulatory region 423525	158 bp proximal
Rr423526	regulatory region 423526	348 bp proximal
Rr423527	regulatory region 423527	1043 bp proximal
Rr423528	regulatory region 423528	1150 bp proximal
Rr423529	regulatory region 423529	1565 bp proximal
Tssr15210	transcription start site region 15210	1471 bp downstream
Tssr15211	transcription start site region 15211	1481 bp downstream
Tssr15212	transcription start site region 15212	1501 bp downstream