rs31567336 SNP Detail

Summary

• ID
  rs31567336
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172152042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGCAGATCA TTTTGTTCCT ACCTCAGAAT CTTCCCCAAC
  CGGAATCCAT CTCAGAAACA GAGGAGTAAG CATTCACTAA TCAGAGACCG GCTCTGACAT
  Y
  GGAAGTCTGG CCCTGAGACA TCTTGGGGTC ATTGGTATTC TTTGGCAAAG CTGGAATAAG
  ATGTATCAGG GAGGGTAGGG AAGGAGAGGC CACCGGGGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49752246	NES13029275	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C		T	C	T	T		T	C	T	C		C
ss120009159	PARCsnp_1.18658	PARC_SEQ	INBRED	f	SNP							T		C
ss120012357	PARCsnp_1.08446	PARC_SEQ	INBRED	f	SNP							T		C
ss146187929	ENSMUSSNP4884081	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
ss320124211	CHEV_1_174254606	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31567336					SNP	C	C	C	C	T	C	T	T	C	T	T	C	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752246	NES13029275	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172152042 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1043	CpG island 1043	1069 bp proximal
Gm36937	predicted gene, 36937	814 bp downstream
Gm70847	predicted gene, 70847	1805 bp upstream
Kcnj9	potassium inwardly-rectifying channel, subfamily J, member 9	within coordinates
Rr423524	regulatory region 423524	33 bp proximal
Rr423525	regulatory region 423525	430 bp proximal
Rr423526	regulatory region 423526	620 bp proximal
Rr423527	regulatory region 423527	1315 bp proximal
Rr423528	regulatory region 423528	1422 bp proximal
Rr423529	regulatory region 423529	1837 bp proximal
Tssr15210	transcription start site region 15210	1743 bp downstream
Tssr15211	transcription start site region 15211	1753 bp downstream
Tssr15212	transcription start site region 15212	1773 bp downstream