rs31567337 SNP Detail

Summary

• ID
  rs31567337
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172151996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCCTGTGTC CTGTCTTCTC TATTGGGTTT GTGCACCCTC
  CCCTCGGGGC AGATCATTTT GTTCCTACCT CAGAATCTTC CCCAACCGGA ATCCATCTCA
  R
  AAACAGAGGA GTAAGCATTC ACTAATCAGA GACCGGCTCT GACATTGGAA GTCTGGCCCT
  GAGACATCTT GGGGTCATTG GTATTCTTTG GCAAAGCTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49752247	NES13029274	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A		G	A	G	G		G	A	G	A		A
ss120009157	PARCsnp_1.18657	PARC_SEQ	INBRED	f	SNP							G		A
ss120012355	PARCsnp_1.08445	PARC_SEQ	INBRED	f	SNP							G		A
ss146187923	ENSMUSSNP5298876	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							A
ss320124210	CHEV_1_174254560	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31567337					SNP	A	A	A	A	G	A	G	G	A	G	G	A	G	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752247	NES13029274	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172151996 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1043	CpG island 1043	1115 bp proximal
Gm36937	predicted gene, 36937	768 bp downstream
Gm70847	predicted gene, 70847	1851 bp upstream
Kcnj9	potassium inwardly-rectifying channel, subfamily J, member 9	within coordinates
Rr423524	regulatory region 423524	79 bp proximal
Rr423525	regulatory region 423525	476 bp proximal
Rr423526	regulatory region 423526	666 bp proximal
Rr423527	regulatory region 423527	1361 bp proximal
Rr423528	regulatory region 423528	1468 bp proximal
Rr423529	regulatory region 423529	1883 bp proximal
Tssr15210	transcription start site region 15210	1789 bp downstream
Tssr15211	transcription start site region 15211	1799 bp downstream
Tssr15212	transcription start site region 15212	1819 bp downstream