rs31567340 SNP Detail

Summary

• ID
  rs31567340
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172151896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCCAAAATA CTACCATCCT TCCCAGCCTT ATCTCTAGAA
  AAGTCAAGCA AGCTCCCATC CCCATGTCCT TTACACTGCC CCTTCCCAGT TCTTGCCCTG
  R
  GCCTGTGTCC TGTCTTCTCT ATTGGGTTTG TGCACCCTCC CCTCGGGGCA GATCATTTTG
  TTCCTACCTC AGAATCTTCC CCAACCGGAA TCCATCTCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45167175	mCV24595586	ABI	CRAMUS_MOUSE	f	SNP	A	A	A				G		A
ss49752250	NES13029272	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	G	A		G	A	G	G		G	A	G	A		A
ss120009151	PARCsnp_1.18654	PARC_SEQ	INBRED	f	SNP							G		A
ss120012349	PARCsnp_1.08442	PARC_SEQ	INBRED	f	SNP							G		A
ss146187909	ENSMUSSNP2483841	ENSEMBL	ENSEMBL_Sanger	f	SNP			A						A
ss320124207	CHEV_1_174254460	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31567340					SNP	A	A	A	A	G	A	G	G	A	G	G	A	G	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752250	NES13029272	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172151896 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1043	CpG island 1043	1215 bp proximal
Gm36937	predicted gene, 36937	668 bp downstream
Gm70847	predicted gene, 70847	1951 bp upstream
Kcnj9	potassium inwardly-rectifying channel, subfamily J, member 9	within coordinates
Rr423524	regulatory region 423524	179 bp proximal
Rr423525	regulatory region 423525	576 bp proximal
Rr423526	regulatory region 423526	766 bp proximal
Rr423527	regulatory region 423527	1461 bp proximal
Rr423528	regulatory region 423528	1568 bp proximal
Rr423529	regulatory region 423529	1983 bp proximal
Tssr15210	transcription start site region 15210	1889 bp downstream
Tssr15211	transcription start site region 15211	1899 bp downstream
Tssr15212	transcription start site region 15212	1919 bp downstream