rs31567660 SNP Detail

Summary

• ID
  rs31567660
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:51624131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCACAGAG GCAGAAACAT
  GTCCTGTAGC CAAAGCCGAG GGATGGGCAA GGTACTGAGC CTGGTGCTTC AGAGCAACAA
  TTAAGTCACA CAGTTTAAAC AACCAGAGGT AGGTCAGAAC CTGGAGGAAT GTGGTTTTTT
  TTTCCTCTCA ATTCTTGCTC CCAGCTATAA TGGTACAACG TAAGCAAGTC GCAGATGGTG
  Y
  TGTGGTTTGG ATCTGGAATG CCTCCCAGAG GTATATGTGT GAAAGCTTGG TCTCTAGCTG
  TGGCAGCTAG CAGGAAATGA CAGAAACGTT AGGAAGCAAG GTCTGGTTGG AGTAAATAGG
  TCATTGGGGT TGGGCCTTTT GAAGCATGCT GGAGCTCCAA CCACTTCCTG TCTTTCTGTT
  TCCTGACAGC TGTAAGGTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45047114	mCV23215976	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	T
ss149111654	ENSMUSSNP6442266	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31567660					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:51624131 () rs orientation: forward

Symbol	Name	Function Class
Gm17767	predicted gene, 17767	within coordinates
Gm70189	predicted gene, 70189	416 bp upstream
Rr366895	regulatory region 366895	within coordinates
Rr410721	regulatory region 410721	788 bp distal
Rr410722	regulatory region 410722	within coordinates
Rr410723	regulatory region 410723	427 bp proximal
Tssr6632	transcription start site region 6632	380 bp upstream
Tssr6633	transcription start site region 6633	441 bp upstream
Tssr11575	transcription start site region 11575	within coordinates
Tssr11576	transcription start site region 11576	290 bp downstream