rs31567908 SNP Detail

Summary

• ID
  rs31567908
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172041823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTAT GAGGACTGAG TTAGGTATTG
  R
  TTAAACCATG TTGGTATGTT GTGCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	PWD/PhJ	SM/J
ss49752927	NES13040856	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	A			G		G
ss120007495	PARCsnp_1.17826	PARC_SEQ	INBRED	f	SNP						A	G
ss120010407	PARCsnp_1.07471	PARC_SEQ	INBRED	f	SNP						A	G
ss146184088	ENSMUSSNP3687891	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G				G
ss320123273	CHEV_1_174144387	CHEVERUD	SCREENING_POP	f	SNP									G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	PWD/PhJ	SM/J
rs31567908					SNP	G	G	G	G	A	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752927	NES13040856	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172041823 () rs orientation: forward

Symbol	Name	Function Class
Casq1	calsequestrin 1	Intron
Gm17224	predicted gene 17224	570 bp downstream
Rr423487	regulatory region 423487	250 bp distal
Tssr15176	transcription start site region 15176	1181 bp upstream
Tssr15177	transcription start site region 15177	1127 bp upstream
Tssr15178	transcription start site region 15178	1094 bp upstream
Tssr15179	transcription start site region 15179	1078 bp upstream
Tssr15180	transcription start site region 15180	858 bp upstream
Tssr15181	transcription start site region 15181	295 bp upstream
Tssr15182	transcription start site region 15182	784 bp downstream
Tssr15183	transcription start site region 15183	1725 bp downstream