rs31567910 SNP Detail

Summary

• ID
  rs31567910
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172041559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTCATCAC TCACCCAAGT
  CTCGTACATA CTCTCAGGCT TCAGTTTCCT CAGGGTTGAT CTAGGAGAGA CAGAGGGTCC
  CTATTCAGTG GGTGGGGACA CCTCCCTCCA GAAGGTCCCC ACAGCTGAAG CCACCTCTGG
  GTCAGGCCTA GGGCATAAAC AGCTTGTAGC CCAGAACAAA GCCAGTTAGC AAATCTAAGC
  Y
  CTGGGCATCA GGCCCAGAAC ATGGCACGGC TGCAAAACAA TGGTTAGTGG GAAGGGGATG
  GCTGGAAGAG AGACGCTGGG GGCAAAGGTA AGAACTGGAT ATCAGCAGAG TCATTTACTT
  TTTCATTCAC TCATTTAGTA AAGCTGACAG CCTGGGCTCG AAATAAAATT CCATGCCTCC
  TGTATGCCAG GCCCTGGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	KK/HlJ	LG/J	PWD/PhJ	SM/J
ss49752929	NES13040852	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T		C
ss320123272	CHEV_1_174144123	CHEVERUD	SCREENING_POP	f	SNP					T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	KK/HlJ	LG/J	PWD/PhJ	SM/J
rs31567910					SNP	T	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752929	NES13040852	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172041559 () rs orientation: forward

Symbol	Name	Function Class
Casq1	calsequestrin 1	Intron
Gm17224	predicted gene 17224	306 bp downstream
Rr423487	regulatory region 423487	within coordinates
Tssr15175	transcription start site region 15175	1970 bp upstream
Tssr15176	transcription start site region 15176	917 bp upstream
Tssr15177	transcription start site region 15177	863 bp upstream
Tssr15178	transcription start site region 15178	830 bp upstream
Tssr15179	transcription start site region 15179	814 bp upstream
Tssr15180	transcription start site region 15180	594 bp upstream
Tssr15181	transcription start site region 15181	31 bp upstream
Tssr15182	transcription start site region 15182	1048 bp downstream
Tssr15183	transcription start site region 15183	1989 bp downstream