rs31567911 SNP Detail

Summary

• ID
  rs31567911
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172041168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGA GTTTGAGTCA GCCTTGTCAT
  R
  TTCATTGTCA TGCCTGTCAC TTGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	PWD/PhJ	SM/J
ss45190350	mCV23614850	ABI	CRAMUS_MOUSE	f	SNP					G	A
ss49752930	NES13040850	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G			A	A		A
ss120007494	PARCsnp_1.17825	PARC_SEQ	INBRED	f	SNP					G	A
ss120010406	PARCsnp_1.07470	PARC_SEQ	INBRED	f	SNP					G	A
ss146184086	ENSMUSSNP1779979	ENSEMBL	ENSEMBL_Sanger	f	SNP						A
ss320123271	CHEV_1_174143732	CHEVERUD	SCREENING_POP	f	SNP									A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	PWD/PhJ	SM/J
rs31567911					SNP	A	A	A	G	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752930	NES13040850	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172041168 () rs orientation: forward

Symbol	Name	Function Class
Casq1	calsequestrin 1	within coordinates
Gm17224	predicted gene 17224	within coordinates
Rr423487	regulatory region 423487	within coordinates
Tssr15175	transcription start site region 15175	1579 bp upstream
Tssr15176	transcription start site region 15176	526 bp upstream
Tssr15177	transcription start site region 15177	472 bp upstream
Tssr15178	transcription start site region 15178	439 bp upstream
Tssr15179	transcription start site region 15179	423 bp upstream
Tssr15180	transcription start site region 15180	203 bp upstream
Tssr15181	transcription start site region 15181	344 bp downstream
Tssr15182	transcription start site region 15182	1439 bp downstream