rs31567912 SNP Detail

Summary

• ID
  rs31567912
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172041091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCTGGGGAT GGGGGTGGTG GGGGAGACCT TACTGTCCTC
  CCGTCCAACC CCTTGCCCGT TGCTTGAATC TGACTCCTGG AATGGCAGCT TATGTTTTCA
  Y
  GGTGGTGACT TTTCTAATGG CATCCTTTCT GCTCTAGGGA TCCTGTCAGC TCCAGAGTTT
  GAGTCAGCCT TGTCATGTTC ATTGTCATGC CTGTCACTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
ss49752931	NES13040847	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C		T	C	C	C	C
ss120007491	PARCsnp_1.17824	PARC_SEQ	INBRED	f	SNP					C	T
ss120010403	PARCsnp_1.07469	PARC_SEQ	INBRED	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
rs31567912					SNP	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752931	NES13040847	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172041091 () rs orientation: forward

Symbol	Name	Function Class
Casq1	calsequestrin 1	within coordinates
Gm17224	predicted gene 17224	within coordinates
Rr423487	regulatory region 423487	22 bp proximal
Tssr15175	transcription start site region 15175	1502 bp upstream
Tssr15176	transcription start site region 15176	449 bp upstream
Tssr15177	transcription start site region 15177	395 bp upstream
Tssr15178	transcription start site region 15178	362 bp upstream
Tssr15179	transcription start site region 15179	346 bp upstream
Tssr15180	transcription start site region 15180	126 bp upstream
Tssr15181	transcription start site region 15181	421 bp downstream
Tssr15182	transcription start site region 15182	1516 bp downstream