rs31567913 SNP Detail

Summary

• ID
  rs31567913
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172039608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGACC AGCTGTAGAG AGAACCAAAC
  R
  CATGAGTTTA ATAGAGGTTA GGAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	PWD/PhJ	SM/J
ss45163896	mCV23614875	ABI	CRAMUS_MOUSE	f	SNP		G	G			A	G
ss49752932	NES13040882	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	A			G		G
ss120007479	PARCsnp_1.17818	PARC_SEQ	INBRED	f	SNP						A	G
ss120010390	PARCsnp_1.07462	PARC_SEQ	INBRED	f	SNP						A	G
ss146184060	ENSMUSSNP1697888	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G				G
ss320123266	CHEV_1_174142172	CHEVERUD	SCREENING_POP	f	SNP									G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	PWD/PhJ	SM/J
rs31567913					SNP	G	G	G	G	A	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752932	NES13040882	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172039608 () rs orientation: forward

Symbol	Name	Function Class
Casq1	calsequestrin 1	within coordinates
Gm17224	predicted gene 17224	within coordinates
Tssr10179	transcription start site region 10179	1696 bp downstream
Tssr15168	transcription start site region 15168	1915 bp upstream
Tssr15169	transcription start site region 15169	1837 bp upstream
Tssr15170	transcription start site region 15170	1815 bp upstream
Tssr15171	transcription start site region 15171	1797 bp upstream
Tssr15172	transcription start site region 15172	1716 bp upstream
Tssr15173	transcription start site region 15173	1622 bp upstream
Tssr15174	transcription start site region 15174	1568 bp upstream
Tssr15175	transcription start site region 15175	19 bp upstream
Tssr15176	transcription start site region 15176	1023 bp downstream
Tssr15177	transcription start site region 15177	1077 bp downstream
Tssr15178	transcription start site region 15178	1101 bp downstream
Tssr15179	transcription start site region 15179	1123 bp downstream
Tssr15180	transcription start site region 15180	1328 bp downstream
Tssr15181	transcription start site region 15181	1904 bp downstream