rs31568541 SNP Detail

Summary

• ID
  rs31568541
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:167758527 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATTACCCAC ATAGGCTTAT TGGAAGGAAT ATCAATTCAG
  TGTGAGGAGG AGTGAGTTCA GGTGTACTGA CTGTGGTGGT TTGAATATGC TTGGCCCACA
  W
  GGAGTGGAAC TGTTAGGAGG TGTGGCTTTG ATGGAGAAAG TTTGTCATTG TAGGGGTGGG
  GTTTGAGACC CTCCTCCTAG CTACCTGGGA GTCAGTCTT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45046828	mCV24467533	ABI	CRAMUS_MOUSE	f	SNP	A	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31568541					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:167758527 () rs orientation: forward

Symbol	Name	Function Class
Cpgi987	CpG island 987	863 bp distal
D1Mit16	DNA segment, Chr 1, Massachusetts Institute of Technology 16	1605 bp distal
Rr422779	regulatory region 422779	383 bp distal
Rr422780	regulatory region 422780	1185 bp proximal
Rr422781	regulatory region 422781	1308 bp proximal