rs31568556 SNP Detail

Summary

• ID
  rs31568556
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153626716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACA CACATTCCTT CTCTGCATCA
  K
  GAGCAAGCTC TGCCCAGAGC TTTGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss45046077	mCV24629815	ABI	CRAMUS_MOUSE	f	SNP	G	T
ss145749382	ENSMUSSNP853155	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs31568556					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153626716 () rs orientation: forward

Symbol	Name	Function Class
Gm28512	predicted gene 28512	within coordinates
Gm28513	predicted gene 28513	1646 bp upstream
Rnasel	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	within coordinates
Rr396399	regulatory region 396399	1390 bp downstream
Rr396400	regulatory region 396400	726 bp upstream
Rr420746	regulatory region 420746	1726 bp distal
Rr420747	regulatory region 420747	1534 bp distal
Rr420748	regulatory region 420748	1547 bp distal
Rr420749	regulatory region 420749	278 bp distal
Rr420750	regulatory region 420750	within coordinates
Rr420751	regulatory region 420751	1392 bp proximal
Tssr9479	transcription start site region 9479	1528 bp downstream
Tssr9480	transcription start site region 9480	1479 bp downstream
Tssr9481	transcription start site region 9481	1447 bp downstream
Tssr9482	transcription start site region 9482	1224 bp downstream
Tssr9483	transcription start site region 9483	896 bp upstream
Tssr9484	transcription start site region 9484	911 bp upstream
Tssr9485	transcription start site region 9485	976 bp upstream
Tssr9486	transcription start site region 9486	1032 bp upstream
Tssr9487	transcription start site region 9487	1813 bp upstream
Tssr9488	transcription start site region 9488	1840 bp upstream
Tssr9489	transcription start site region 9489	1882 bp upstream