rs31568558 SNP Detail

Summary

• ID
  rs31568558
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:75102539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTG GGATGCAGGA ACACAGGTTT
  Y
  TGATGGGTAA AGGAAGCCCA TACTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45046079	mCV25280854	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss144691839	ENSMUSSNP2347430	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
ss319795816	CHEV_1_75122469	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31568558					SNP	C	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:75102539 () rs orientation: forward

Symbol	Name	Function Class
Cpgi409	CpG island 409	525 bp distal
Nhej1	non-homologous end joining factor 1	669 bp upstream
Rr29642	regulatory region 29642	within coordinates
Rr371532	regulatory region 371532	within coordinates
Slc23a3	solute carrier family 23 (nucleobase transporters), member 3	within coordinates
Tssr12335	transcription start site region 12335	945 bp upstream
Tssr12336	transcription start site region 12336	685 bp upstream
Tssr12337	transcription start site region 12337	640 bp upstream