rs31568634 SNP Detail

Summary

• ID
  rs31568634
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:89531211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATTTGGCCCT GAGCCATGCC AGCCTTGCCT TCCTTCAGAC TGGGCCCTGT TTTTTAAAGA
  AAGGTTTCAT GATGAAACTG TGTCGATTCT TTAGTCTTTC TTTTCTTTTC TTTTCTTTTC
  TTTTCTTTTC TTTTCTTTTC TTTTCTTTTC TTTTCTTTCC CGTCTCCCTC CCCCTCCCTT
  CCCCCTCCTT CTATTAAGTC AACTATTTTA TTAACCTAGT TGCCACAAAA ATGAACATTC
  TGCAAAGATG TCACACAAGG CTACAGTATG GATGTGTCTT GTCTTCTGTA GCTTCTGCAG
  R
  TCACCCGGTG CTCCTGATTT AGCTTCTCTG AGCAGAGACC TTCCTCCGGG TGACTCGGCT
  CCTTAGACAT GGGGGTTTCT AGGTCAGTGC AGGGCCAGGG ATGTCTGTCC TGTGTTGGTT
  GCAGCCTCTT TGGTGTCAGG GGACTATCTT CCTGGCCTGC TTGGCACCCC TCACCCTTTC
  CAGCCACCGA CAGAGGAGAA GCAGGCCATG GCTTCCAGCC CTGACACCTG CTGGGTCTGA
  GTACCAAGCA TCCTCCTGAG CAGGATGACT GACTTGACCT TGAATGTGTT GTGGGAGACT
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss45046920	mCV25259014	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss144924410	ENSMUSSNP14412	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs31568634					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:89531211 () rs orientation: forward

Symbol	Name	Function Class
Agap1	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	within coordinates
Rr23524	regulatory region 23524	1190 bp proximal
Rr35151	regulatory region 35151	within coordinates
Tssr8003	transcription start site region 8003	229 bp downstream