rs31568687 SNP Detail

Summary

• ID
  rs31568687
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44398421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGGCTGG GGTTCGGGGG
  CGGGAGTGGG GGGAGCACCC ACTTCCTCTG TTTTGCTGGG AAGGTGTTGG GCGGAGCCTG
  TGAGGAATGT CAGACACTCC GCCTCCGCCT CCACGGGTAC CTCGTCACTG GTTTCTTTGG
  GATTGTGGGG CCCGGTCCAG TCTCTGCTAC TTAGGGAAGT GTTAGTCCCA CACCTGTGGA
  R
  TTTAGCCTTT GGTACTCTGC TGTGCTGCGT TCCTGCAACA GGAGCATAGA TGGTAGCAAG
  CTGATGGTCA TACGTAGGAT AAATGAACTA AACAAATGGG TGCATAATAA AAGCCGACTT
  GAGTATCAGT AGTCGGAACT GAATGTGCAG CCTTAGACAG GAGACCTCAA CACTCAAGAT
  CCGAGCACTT ACTGTATGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ
ss46045841	mCV27580302	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	A
ss51890942	NES14914126	PERLEGEN	MM_PANEL2	f	SNP			A		A	G		G
ss149120975	ENSMUSSNP1872100	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ
rs31568687					SNP	A	G	A	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51890942	NES14914126	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44398421 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18993	CpG island 18993	within coordinates
Rr400296	regulatory region 400296	401 bp downstream
Tssr66420	transcription start site region 66420	437 bp downstream
Tssr66421	transcription start site region 66421	363 bp downstream
Tssr66422	transcription start site region 66422	346 bp downstream
Tssr66423	transcription start site region 66423	69 bp downstream
Tssr66424	transcription start site region 66424	within coordinates
Vrk3	vaccinia related kinase 3	within coordinates
Zfp473	zinc finger protein 473	380 bp upstream