rs31568824 SNP Detail

Summary

• ID
  rs31568824
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172039326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTGAAGAAT GGGCAGGTGG ATCCTGTGAG TGGATGATGC
  ACGTGCTCAG ATCATGCATT CCCACCCCAC AGGTCTAGCC TTGGACCGAT GTCTCCTGCT
  Y
  CTGGACAGTG CTCGTTTCCT TGACAGTCAG AGAACTAACT ATACTGAGAG AACTAACAGT
  ACAGAGAAGC ACTGGTGCTC AGCTCGAGGT CACAGCACCC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss49752933	NES13040880	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs31568824					SNP	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752933	NES13040880	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172039326 () rs orientation: forward

Symbol	Name	Function Class
Casq1	calsequestrin 1	Intron
Gm17224	predicted gene 17224	within coordinates
Rr423487	regulatory region 423487	1787 bp proximal
Tssr10179	transcription start site region 10179	1414 bp downstream
Tssr15168	transcription start site region 15168	1633 bp upstream
Tssr15169	transcription start site region 15169	1555 bp upstream
Tssr15170	transcription start site region 15170	1533 bp upstream
Tssr15171	transcription start site region 15171	1515 bp upstream
Tssr15172	transcription start site region 15172	1434 bp upstream
Tssr15173	transcription start site region 15173	1340 bp upstream
Tssr15174	transcription start site region 15174	1286 bp upstream
Tssr15175	transcription start site region 15175	224 bp downstream
Tssr15176	transcription start site region 15176	1305 bp downstream
Tssr15177	transcription start site region 15177	1359 bp downstream
Tssr15178	transcription start site region 15178	1383 bp downstream
Tssr15179	transcription start site region 15179	1405 bp downstream
Tssr15180	transcription start site region 15180	1610 bp downstream