rs31568825 SNP Detail

Summary

• ID
  rs31568825
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172038566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAGTGTATT TTTTTTTAAA TACCTGTCTG TTCCCAAGCC
  TGATTTCACT TTTTTGCTGT CTTTGTTCTT ATTTATTTAT TTATTTATTT TTAGGGTGTG
  S
  TCTTGATGGC TCACACCTTT AATCCCAGTA CTCTGGAGAC AGAGGTAAAG GTAGGGAGAT
  CTTTTGAGTT CAAGGCCAGC ATGTGCTCTT GCTTTATAGC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49752934	NES13040899	PERLEGEN	MM_PANEL2	f	SNP	C	G	G	G	G	C	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31568825					SNP	C	G	G	G	G	C	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752934	NES13040899	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172038566 () rs orientation: forward

Symbol	Name	Function Class
Casq1	calsequestrin 1	within coordinates
Gm17224	predicted gene 17224	within coordinates
Tssr10179	transcription start site region 10179	654 bp downstream
Tssr15168	transcription start site region 15168	873 bp upstream
Tssr15169	transcription start site region 15169	795 bp upstream
Tssr15170	transcription start site region 15170	773 bp upstream
Tssr15171	transcription start site region 15171	755 bp upstream
Tssr15172	transcription start site region 15172	674 bp upstream
Tssr15173	transcription start site region 15173	580 bp upstream
Tssr15174	transcription start site region 15174	526 bp upstream
Tssr15175	transcription start site region 15175	984 bp downstream