rs31568827 SNP Detail

Summary

• ID
  rs31568827
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172036153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAC CTGAGCCTGT CCTGCGGAGT
  R
  CGGGTGCGCA CGAGTCCTTT TTATA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	PWD/PhJ	SM/J
ss49752936	NES13040979	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	A		G	G		G
ss120007402	PARCsnp_1.17779	PARC_SEQ	INBRED	f	SNP						A	G
ss120010306	PARCsnp_1.07420	PARC_SEQ	INBRED	f	SNP						A	G
ss146183900	ENSMUSSNP862233	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G				G
ss320123229	CHEV_1_174138717	CHEVERUD	SCREENING_POP	f	SNP									G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	PWD/PhJ	SM/J
rs31568827					SNP	G	G	G	G	A	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752936	NES13040979	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172036153 () rs orientation: forward

Symbol	Name	Function Class
Casq1	calsequestrin 1	1308 bp downstream
Gm17224	predicted gene 17224	within coordinates
Pea15a	proliferation and apoptosis adaptor protein 15A	1855 bp upstream
Rr396578	regulatory region 396578	1046 bp downstream
Rr423485	regulatory region 423485	1793 bp distal
Rr423486	regulatory region 423486	1292 bp distal
Tssr294	transcription start site region 294	1953 bp upstream
Tssr295	transcription start site region 295	1903 bp upstream
Tssr296	transcription start site region 296	1827 bp upstream
Tssr297	transcription start site region 297	1793 bp upstream
Tssr10179	transcription start site region 10179	1737 bp upstream
Tssr15164	transcription start site region 15164	1921 bp upstream
Tssr15165	transcription start site region 15165	1831 bp upstream
Tssr15166	transcription start site region 15166	1800 bp upstream
Tssr15167	transcription start site region 15167	880 bp upstream
Tssr15168	transcription start site region 15168	1520 bp downstream
Tssr15169	transcription start site region 15169	1607 bp downstream
Tssr15170	transcription start site region 15170	1634 bp downstream
Tssr15171	transcription start site region 15171	1648 bp downstream
Tssr15172	transcription start site region 15172	1730 bp downstream
Tssr15173	transcription start site region 15173	1822 bp downstream
Tssr15174	transcription start site region 15174	1874 bp downstream