rs31568829 SNP Detail

Summary

• ID
  rs31568829
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172034924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCCTGCCTT TCCCAAATAT ACCCCCACAC ACGCACCCCC
  ACACCCCCAC ACACTATGAT GTAATTTTAT TTTCTGGAGG AAAAAAGCCA TGAGCTCAGC
  W
  TGCAAATATA GACAACAAAG CCACACTTAG CTGTCTCCTA GCTCTGTCCT TCTGCCTAGG
  CCCAGTGTGA TAATTCTCAC TTCCCCTACA CCTCAGGGA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss45155900	mCV23614896	ABI	CRAMUS_MOUSE	f	SNP		A	T	A
ss49752938	NES13040977	PERLEGEN	MM_PANEL2	f	SNP	A		T			T		T	T
ss120007356	PARCsnp_1.17756	PARC_SEQ	INBRED	f	SNP				A	T
ss120010256	PARCsnp_1.07395	PARC_SEQ	INBRED	f	SNP				A	T
ss146183843	ENSMUSSNP5040051	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T
ss320123204	CHEV_1_174137488	CHEVERUD	SCREENING_POP	f	SNP							A			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs31568829					SNP	A	A	T	A	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752938	NES13040977	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172034924 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1038	CpG island 1038	404 bp distal
Gm17224	predicted gene 17224	within coordinates
Pea15a	proliferation and apoptosis adaptor protein 15A	626 bp upstream
Rr396578	regulatory region 396578	within coordinates
Rr423484	regulatory region 423484	1881 bp distal
Rr423485	regulatory region 423485	564 bp distal
Rr423486	regulatory region 423486	63 bp distal
Tssr294	transcription start site region 294	724 bp upstream
Tssr295	transcription start site region 295	674 bp upstream
Tssr296	transcription start site region 296	598 bp upstream
Tssr297	transcription start site region 297	564 bp upstream
Tssr15164	transcription start site region 15164	692 bp upstream
Tssr15165	transcription start site region 15165	602 bp upstream
Tssr15166	transcription start site region 15166	571 bp upstream
Tssr15167	transcription start site region 15167	344 bp downstream