rs31568831 SNP Detail

Summary

• ID
  rs31568831
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172032826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTAT GACAGCGTAT GTACACCTGC
  Y
  GAGCACAGGT GTCACACAAG TAGTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49752940	NES13040976	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T		C		T		C	T	T	T		C
ss120007336	PARCsnp_1.17746	PARC_SEQ	INBRED	f	SNP							C		T
ss120010235	PARCsnp_1.07385	PARC_SEQ	INBRED	f	SNP							C		T
ss320123194	CHEV_1_174135390	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31568831					SNP	T	T	T	T	C	T	C	C	T	T	T	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752940	NES13040976	PERLEGEN	MM_PANEL	f	SNP	C/T
ss146183806	ENSMUSSNP3700479	ENSEMBL	ENSEMBL_Sanger	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172032826 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1038	CpG island 1038	949 bp proximal
Gm17224	predicted gene 17224	1768 bp upstream
Pea15a	proliferation and apoptosis adaptor protein 15A	within coordinates
Rr396578	regulatory region 396578	1981 bp upstream
Rr423483	regulatory region 423483	316 bp distal
Rr423484	regulatory region 423484	within coordinates
Rr423485	regulatory region 423485	218 bp proximal
Rr423486	regulatory region 423486	1535 bp proximal
Tssr294	transcription start site region 294	1369 bp downstream
Tssr295	transcription start site region 295	1421 bp downstream
Tssr296	transcription start site region 296	1497 bp downstream
Tssr297	transcription start site region 297	1528 bp downstream
Tssr15164	transcription start site region 15164	1395 bp downstream
Tssr15165	transcription start site region 15165	1425 bp downstream
Tssr15166	transcription start site region 15166	1516 bp downstream