rs31568832 SNP Detail

Summary

• ID
  rs31568832
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172032598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGCCTTG GGCTTGACAG
  GCAAGCACTC TACCATTGAG CTAATTCCCA CCCCCCTTTT ATTCTTTTAC TGGGCACTGA
  GGCCTCCCAG CTCTTCCTGC TCACTCCATT TGGCGGTAGC CATGGATACA TTTGAACTTG
  GTAAGACTCT GTGTTCCCAC CTAAGTACCC AGAGCTACCA TAAGGAAGGG ATGAGCCTTC
  Y
  GGATGGAAAG AGAGAGCAGC GGCTTGGGAG GGACTGATGC ATACTGGGTG GCTACTGACC
  AGCCGGCGGA GATGGCCATC TTGACAGTGT ACATGAAGGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGGTGTGTT
  ACAGTGTGGC TCTGTGCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49752941	NES13040988	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31568832					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752941	NES13040988	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172032598 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1038	CpG island 1038	1177 bp proximal
Gm17224	predicted gene 17224	1996 bp upstream
Pea15a	proliferation and apoptosis adaptor protein 15A	within coordinates
Rr423483	regulatory region 423483	88 bp distal
Rr423484	regulatory region 423484	within coordinates
Rr423485	regulatory region 423485	446 bp proximal
Rr423486	regulatory region 423486	1763 bp proximal
Tssr294	transcription start site region 294	1597 bp downstream
Tssr295	transcription start site region 295	1649 bp downstream
Tssr296	transcription start site region 296	1725 bp downstream
Tssr297	transcription start site region 297	1756 bp downstream
Tssr15164	transcription start site region 15164	1623 bp downstream
Tssr15165	transcription start site region 15165	1653 bp downstream
Tssr15166	transcription start site region 15166	1744 bp downstream