rs31569525 SNP Detail

Summary

• ID
  rs31569525
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172032471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAGTTTCT CTCTCCCTAG
  TCATCTTTAG TTTATTTTTC TGCCTCTTTC AGTTACTCTT TTTTTGGGGG GGTTTCTTTT
  TTGTAATTTT GTCTCCCACC CCTCTCCCAC CTGGGAGGAC CAAAACCCAG GGCCTTGGGC
  TTGACAGGCA AGCACTCTAC CATTGAGCTA ATTCCCACCC CCCTTTTATT CTTTTACTGG
  R
  CACTGAGGCC TCCCAGCTCT TCCTGCTCAC TCCATTTGGC GGTAGCCATG GATACATTTG
  AACTTGGTAA GACTCTGTGT TCCCACCTAA GTACCCAGAG CTACCATAAG GAAGGGATGA
  GCCTTCCGGA TGGAAAGAGA GAGCAGCGGC TTGGGAGGGA CTGATGCATA CTGGGTGGCT
  ACTGACCAGC CGGCGGAGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49752945	NES13040985	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31569525					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752945	NES13040985	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172032471 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1038	CpG island 1038	1304 bp proximal
Pea15a	proliferation and apoptosis adaptor protein 15A	within coordinates
Rr423483	regulatory region 423483	within coordinates
Rr423484	regulatory region 423484	72 bp proximal
Rr423485	regulatory region 423485	573 bp proximal
Rr423486	regulatory region 423486	1890 bp proximal
Tssr294	transcription start site region 294	1724 bp downstream
Tssr295	transcription start site region 295	1776 bp downstream
Tssr296	transcription start site region 296	1852 bp downstream
Tssr297	transcription start site region 297	1883 bp downstream
Tssr15164	transcription start site region 15164	1750 bp downstream
Tssr15165	transcription start site region 15165	1780 bp downstream
Tssr15166	transcription start site region 15166	1871 bp downstream