rs31569526 SNP Detail

Summary

• ID
  rs31569526
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172032226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTCCTGT AACAATGAAG
  AAAGTTTTAC GGTTTCCAAG GTCAGCCTAG GAGCAGGGCT CCAAAATGTA CATCTAAAAA
  AACGGAAAAA CAGGTTGCCT CTGAGAAGGG GGAGGGCCAT GCCCAAGATG GAGGCAGCCA
  GAGCTAACTG GCCTGGGATT AGGCAGGGCA GAGCGGGGCT TGCTGGTTAT GAGCGGGGAT
  R
  AGCCCTGTGT GACTAGCTAG CTTTCCCAGC TTTCCCCTTC CTGGTTTAGT TTCTCTCTCC
  CTAGTCATCT TTAGTTTATT TTTCTGCCTC TTTCAGTTAC TCTTTTTTTG GGGGGGTTTC
  TTTTTTGTAA TTTTGTCTCC CACCCCTCTC CCACCTGGGA GGACCAAAAC CCAGGGCCTT
  GGGCTTGACA GGCAAGCACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49752946	NES13041071	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31569526					SNP	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752946	NES13041071	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172032226 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1038	CpG island 1038	1549 bp proximal
Pea15a	proliferation and apoptosis adaptor protein 15A	within coordinates
Rr423483	regulatory region 423483	within coordinates
Rr423484	regulatory region 423484	317 bp proximal
Rr423485	regulatory region 423485	818 bp proximal
Tssr294	transcription start site region 294	1969 bp downstream
Tssr15164	transcription start site region 15164	1995 bp downstream