rs31570147 SNP Detail

Summary

• ID
  rs31570147
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165667603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGGCCCAGG CTGTTTGAGG AGGAGTTCGC AATGCTGACT
  GGGGATTTCA GAACAGCCAT AAACTGGACT TAGACCTTGT CCTGGGAAGT AAAAAGAGAA
  Y
  GTCAAGATCT GAGGGAGTAA GACACATCAG CCTCTGCACC ATCAGCCTCT CCACCATCAG
  CTTCTGCACC ATCATCAGCC TCTGCACCAT CAGCCTCTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45047336	mCV24492594	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31570147					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165667603 () rs orientation: forward

Symbol	Name	Function Class
Cd247	CD247 antigen	within coordinates
Cpgi956	CpG island 956	845 bp proximal
Gm71096	predicted gene, 71096	within coordinates
Gm71107	predicted gene, 71107	1025 bp upstream
Rr372389	regulatory region 372389	1969 bp upstream
Rr422481	regulatory region 422481	1801 bp distal
Rr422482	regulatory region 422482	513 bp distal
Rr422483	regulatory region 422483	624 bp proximal
Rr422484	regulatory region 422484	910 bp proximal
Rr422485	regulatory region 422485	1036 bp proximal
Tssr268	transcription start site region 268	1106 bp downstream
Tssr269	transcription start site region 269	136 bp upstream
Tssr9850	transcription start site region 9850	1358 bp downstream
Tssr9851	transcription start site region 9851	1022 bp upstream
Tssr9852	transcription start site region 9852	1635 bp upstream