rs31571339 SNP Detail

Summary

• ID
  rs31571339
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171973772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGTC CTTACTGTGT ACTGTTTGCA
  R
  TCCTCGATAA TGCAAGGTAT TGCAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
ss45048092	mCV23114276	ABI	CRAMUS_MOUSE	f	SNP		G	G			A		G
ss49753193	NES13042576	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	A		G	G		A		G
ss120006858	PARCsnp_1.17507	PARC_SEQ	INBRED	f	SNP						A		G
ss120009731	PARCsnp_1.07133	PARC_SEQ	INBRED	f	SNP						A		G
ss146182846	ENSMUSSNP7235832	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G					G
ss320122952	CHEV_1_174076336	CHEVERUD	SCREENING_POP	f	SNP									G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
rs31571339					SNP	G	G	G	G	A	A	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49753193	NES13042576	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171973772 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1037	CpG island 1037	1632 bp proximal
Dcaf8	DDB1 and CUL4 associated factor 8	1802 bp upstream
Gm10171	predicted gene 10171	1304 bp upstream
Gm70088	predicted gene, 70088	1524 bp downstream
Rr372457	regulatory region 372457	1087 bp upstream
Rr423469	regulatory region 423469	966 bp proximal
Rr423470	regulatory region 423470	1772 bp proximal
Rr423471	regulatory region 423471	1984 bp proximal
Tssr10170	transcription start site region 10170	1832 bp upstream
Tssr10171	transcription start site region 10171	1853 bp upstream
Tssr10172	transcription start site region 10172	1893 bp upstream
Tssr10173	transcription start site region 10173	1905 bp upstream
Tssr15148	transcription start site region 15148	1718 bp downstream