rs31571709 SNP Detail

Summary

• ID
  rs31571709
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172029385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCAGACCT GGGACTGGAG
  AGATGGCTCA GAGGTTAGCA CTGGCTACTC TTCCAGAGGA CCTGGGTTCA ATTCCCAGCA
  CCCACATGGC AGTTCACACC TGTCAGTTTC AGAGGATTCG ACACCTTCAC ACAGACATAT
  ATATGCAGGC AAAACACCAA TGTTGTTTTT TTTTTTTTTA AGCCTTTAGA ACGTGGATTG
  W
  TAAAATGTAA AACTCCAGTG GTAAGCTAAA ATCAGGGATC TGAGCATAGT AGCGTAGCCT
  ACAATTTCAG TACTCAGGAG TCTGAGGCAG GAAGATTGCT GCAAGTTTAA GGTCAGTCTG
  GACTACCAGG CAAAACCTTG TTTCACATAA GGGCCAGTTT TCTGCAATGA GTATGTATTT
  TTTTTATAGT CTGAAAATTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49752980	NES13041085	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31571709					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752980	NES13041085	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172029385 () rs orientation: forward

Symbol	Name	Function Class
Pea15a	proliferation and apoptosis adaptor protein 15A	within coordinates
Rr28998	regulatory region 28998	within coordinates
Tssr15161	transcription start site region 15161	1316 bp upstream
Tssr15162	transcription start site region 15162	1263 bp upstream
Tssr15163	transcription start site region 15163	1229 bp upstream