rs31572534 SNP Detail

Summary

• ID
  rs31572534
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172028353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGAAAGG GAGAGAGCAA
  GCAGAGCTTA CCCTATGGGG TAAGGGTCAC TTACTTCAAG TACTTACCTG AGACTTAACT
  CCCACCCCCA GCAACATGCG CCCACACGCC CACACTTTGT CCTGCCCGGG AGAGTGAGCA
  GGTCTGGAGG GAGAAAAGGA AAGCCCTGCA TAACAGAAGA AACTTAGAAA AGCTAGGAGC
  Y
  GAGAGTGATA AGTCATAACA CACACACACA CACACACACA CACACACACA CACACACACA
  CACACACACA CACCCCAATA CACCATCTTT TTCTTCTTTT TCCCTCCCTT AACGGTAACC
  CTGGCAACAG CTCCCCTGAC TGAGGAGGCG GTTACCATGG CAACATTCTC CAGACTTTCT
  TACAGTCTCC CAAGTACCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49752985	NES13041148	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31572534					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752985	NES13041148	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172028353 () rs orientation: forward

Symbol	Name	Function Class
Pea15a	proliferation and apoptosis adaptor protein 15A	within coordinates
Rr28998	regulatory region 28998	within coordinates
Tssr15158	transcription start site region 15158	1618 bp upstream
Tssr15159	transcription start site region 15159	1579 bp upstream
Tssr15160	transcription start site region 15160	1537 bp upstream
Tssr15161	transcription start site region 15161	284 bp upstream
Tssr15162	transcription start site region 15162	231 bp upstream
Tssr15163	transcription start site region 15163	197 bp upstream