rs31572536 SNP Detail

Summary

• ID
  rs31572536
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172028168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGCTGACTT GAGCTGTTCC AGATCTTCAA GGGTGATGTT
  GTTGGTCAGG TCCTGAAGGA GAGTTCCGTA CTCTGCCATG ACTGGAGGAG AAAGGGAGAG
  M
  GCAAGCAGAG CTTACCCTAT GGGGTAAGGG TCACTTACTT CAAGTACTTA CCTGAGACTT
  AACTCCCACC CCCAGCAACA TGCGCCCACA CGCCCACAC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss45157430	mCV23615016	ABI	CRAMUS_MOUSE	f	SNP	C			A
ss49752987	NES13041146	PERLEGEN	MM_PANEL2	f	SNP	C	C	A		A	C	A		A	C		A
ss120007296	PARCsnp_1.17726	PARC_SEQ	INBRED	f	SNP				A		C
ss120010194	PARCsnp_1.07364	PARC_SEQ	INBRED	f	SNP				A		C
ss146183728	ENSMUSSNP1678029	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320123174	CHEV_1_174130732	CHEVERUD	SCREENING_POP	f	SNP								C			C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs31572536					SNP	C	C	A	A	A	C	A	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752987	NES13041146	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172028168 () rs orientation: forward

Symbol	Name	Function Class
Pea15a	proliferation and apoptosis adaptor protein 15A	within coordinates
Rr28998	regulatory region 28998	within coordinates
Tssr10177	transcription start site region 10177	1976 bp downstream
Tssr10178	transcription start site region 10178	1930 bp downstream
Tssr15158	transcription start site region 15158	1433 bp upstream
Tssr15159	transcription start site region 15159	1394 bp upstream
Tssr15160	transcription start site region 15160	1352 bp upstream
Tssr15161	transcription start site region 15161	99 bp upstream
Tssr15162	transcription start site region 15162	46 bp upstream
Tssr15163	transcription start site region 15163	12 bp upstream