rs31572538 SNP Detail

Summary

• ID
  rs31572538
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172028018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTC TCCAGGAAGC TAAACCAGGC
  R
  CTGCCTGTGG TGATCTCCTC ACTCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45100483	mCV23615026	ABI	CRAMUS_MOUSE	f	SNP		G				A
ss49752989	NES13041145	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G		G	G	G	G		G	G	G		G
ss120007293	PARCsnp_1.17725	PARC_SEQ	INBRED	f	SNP						A		G
ss120010191	PARCsnp_1.07363	PARC_SEQ	INBRED	f	SNP						A		G
ss146183726	ENSMUSSNP3978346	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss320123173	CHEV_1_174130582	CHEVERUD	SCREENING_POP	f	SNP											G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31572538					SNP	G	G	G	A	G	A	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752989	NES13041145	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172028018 () rs orientation: forward

Symbol	Name	Function Class
Pea15a	proliferation and apoptosis adaptor protein 15A	within coordinates
Rr28998	regulatory region 28998	within coordinates
Tssr10177	transcription start site region 10177	1826 bp downstream
Tssr10178	transcription start site region 10178	1780 bp downstream
Tssr15156	transcription start site region 15156	1935 bp upstream
Tssr15157	transcription start site region 15157	1892 bp upstream
Tssr15158	transcription start site region 15158	1283 bp upstream
Tssr15159	transcription start site region 15159	1244 bp upstream
Tssr15160	transcription start site region 15160	1202 bp upstream
Tssr15161	transcription start site region 15161	33 bp downstream
Tssr15162	transcription start site region 15162	90 bp downstream
Tssr15163	transcription start site region 15163	106 bp downstream