rs31572540 SNP Detail

Summary

• ID
  rs31572540
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172027650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCACACAC CTGTAACTAA
  CTCGGCTGCC TTAGACCCAA TATTTTTTAG CCCAGCTAAC GTAGACTGTG TTCTTTTGCT
  TAACATGTTC TCTGGGTTCT ACCTTAGACA TACCATTTGC TTTTGGAGGC AGTCTATTAT
  CAGCAACTTG GGGGGGGGGG CTCTCTCCTT CCAAGGTGAG CCCTGGGCCC TCTTGTTAGG
  Y
  ATACATGGCA AATCCTTTTA CCTGCTATCC TGCCAGCACT TGGGGCCATC TTAAATGCCA
  TTTGACCCTT CGAGCCCCAG CTGCATGGCA TTGCTCTAAT CCAGTGTCTC CCTCCCACCC
  CTAAAAGGCA GCAGTCTCTA GACATAGGTA AGAGAACATT AGAACAGTGG TCTTAAGTTC
  TACCACACAT TGTACTGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49752991	NES13041144	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31572540					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752991	NES13041144	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172027650 () rs orientation: forward

Symbol	Name	Function Class
Pea15a	proliferation and apoptosis adaptor protein 15A	within coordinates
Rr28998	regulatory region 28998	350 bp proximal
Tssr10176	transcription start site region 10176	1847 bp downstream
Tssr10177	transcription start site region 10177	1458 bp downstream
Tssr10178	transcription start site region 10178	1412 bp downstream
Tssr15154	transcription start site region 15154	1881 bp upstream
Tssr15155	transcription start site region 15155	1740 bp upstream
Tssr15156	transcription start site region 15156	1567 bp upstream
Tssr15157	transcription start site region 15157	1524 bp upstream
Tssr15158	transcription start site region 15158	915 bp upstream
Tssr15159	transcription start site region 15159	876 bp upstream
Tssr15160	transcription start site region 15160	834 bp upstream
Tssr15161	transcription start site region 15161	401 bp downstream
Tssr15162	transcription start site region 15162	458 bp downstream
Tssr15163	transcription start site region 15163	474 bp downstream