rs31572543 SNP Detail

Summary

• ID
  rs31572543
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172027377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGTATGGG GAGAAATCCC
  AGACACTACA CAGAACAGGA AGGTGAGATT TATGGTCAAT CAAAGAGATA TTCTGAGCCA
  GTAAGGAAAG TTACATAACT GACAGAAAGC ATTGACACCA TCAGGCTGGC TTAAGATTGC
  CATTATTTCA TCTGGCTCCT GTCCTCTGAT TGTTGCAATA GTCTTAACTG TAAGAGGTCG
  Y
  CCTTCGGCTT TCCTCCCTGC TGTCAGACCC CAGCCAGACT CGTTCATAGG AAGGACTCTG
  GGGTGACTTC AGTTTCACAC ACCTGTAACT AACTCGGCTG CCTTAGACCC AATATTTTTT
  AGCCCAGCTA ACGTAGACTG TGTTCTTTTG CTTAACATGT TCTCTGGGTT CTACCTTAGA
  CATACCATTT GCTTTTGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49752994	NES13041142	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31572543					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752994	NES13041142	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172027377 () rs orientation: forward

Symbol	Name	Function Class
Pea15a	proliferation and apoptosis adaptor protein 15A	within coordinates
Rr28998	regulatory region 28998	623 bp proximal
Tssr10176	transcription start site region 10176	1574 bp downstream
Tssr10177	transcription start site region 10177	1185 bp downstream
Tssr10178	transcription start site region 10178	1139 bp downstream
Tssr15150	transcription start site region 15150	1936 bp upstream
Tssr15151	transcription start site region 15151	1899 bp upstream
Tssr15152	transcription start site region 15152	1749 bp upstream
Tssr15153	transcription start site region 15153	1731 bp upstream
Tssr15154	transcription start site region 15154	1608 bp upstream
Tssr15155	transcription start site region 15155	1467 bp upstream
Tssr15156	transcription start site region 15156	1294 bp upstream
Tssr15157	transcription start site region 15157	1251 bp upstream
Tssr15158	transcription start site region 15158	642 bp upstream
Tssr15159	transcription start site region 15159	603 bp upstream
Tssr15160	transcription start site region 15160	561 bp upstream
Tssr15161	transcription start site region 15161	674 bp downstream
Tssr15162	transcription start site region 15162	731 bp downstream
Tssr15163	transcription start site region 15163	747 bp downstream