rs31572560 SNP Detail

Summary

• ID
  rs31572560
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:25778502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTCTAGG AGGGCTGTGA
  CCCCCAGTAG GGTGGTTTGT GGGAATGCAG AGGTCCCCAA GGTCAGATCT CTGTAAGTGA
  CCCCAGCAGT TGCCCTGTAA GCCTCACCTG GACAGAATGT CCACTTAGCA GTTACACGAG
  ACACTTAGGC TGCTGCATGG GCTCCACCAA AGCCTCTGGG GTGCAGCTCT GTCCTGTGAC
  R
  TTGCTACCTG AGTGTATCTC TTGTCTTAAA CACTGGGGCT CATGAGGATT TCAGGTTCTG
  GAGTTTTTCA TATTGGAATC TCTTATCTGC CTGGCCTCTC CTGATTGGCA GTCAGAAATT
  CAAAAGTACC CCAAGATCTG AATTTTTTTC TGTACTGAAC ATTGATTTCT CCTACCCCAG
  TACTTGTTCA TACATCCTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss39303100	mCV22644392	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss147356410	ENSMUSSNP1420398	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs31572560					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:25778502 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6971	CpG island 6971	1458 bp proximal
Myo10	myosin X	within coordinates
Tssr130836	transcription start site region 130836	276 bp downstream
Tssr130837	transcription start site region 130837	1583 bp upstream