rs31572723 SNP Detail

Summary

• ID
  rs31572723
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:118271780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGCT GACAGACAGT TGCTTCTGGG
  W
  AGAATTTAAC AATCTGGTCT CATTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46252426	mCV22820155	ABI	CRAMUS_MOUSE	f	SNP		T						T		A
ss47566309	NES11159950	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		T		A	T		T	T	T	T		T
ss145802003	ENSMUSSNP3272799	ENSEMBL	ENSEMBL_Sanger	f	SNP		T								A
ss322840511	CHEV_8_120068941	CHEVERUD	SCREENING_POP	f	SNP													A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31572723					SNP	T	T	T	T	T	T	T	T	T	A	A	T	A	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47566309	NES11159950	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:118271780 () rs orientation: forward

Symbol	Name	Function Class
Gm55302	predicted gene, 55302	1931 bp downstream
Plcg2	phospholipase C, gamma 2	within coordinates
Rr670892	regulatory region 670892	824 bp distal
Rr670893	regulatory region 670893	1449 bp proximal