rs31572878 SNP Detail

Summary

• ID
  rs31572878
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:15875307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAGG TGTTAGTGTA GGTAGGTGGG
  Y
  CATTGTCTAG ATTGGTCCTG AGCAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46046262	mCV27566941	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss148377725	ENSMUSSNP4948511	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss322108687	CHEV_7_16726731	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31572878					SNP	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:15875307 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18356	CpG island 18356	171 bp distal
Slc8a2	solute carrier family 8 (sodium/calcium exchanger), member 2	within coordinates