rs31573225 SNP Detail

Summary

• ID
  rs31573225
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172027245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACCCACCCT GTCTTTCCAC TTTCCTTCCA GATGAGTATG
  GGGAGAAATC CCAGACACTA CACAGAACAG GAAGGTGAGA TTTATGGTCA ATCAAAGAGA
  K
  ATTCTGAGCC AGTAAGGAAA GTTACATAAC TGACAGAAAG CATTGACACC ATCAGGCTGG
  CTTAAGATTG CCATTATTTC ATCTGGCTCC TGTCCTCTG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45086168	mCV23615028	ABI	CRAMUS_MOUSE	f	SNP	G	G	G					T		G
ss49752996	NES13041140	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	T	G		T	G	T	G		T	G	G	G		T
ss120007292	PARCsnp_1.17724	PARC_SEQ	INBRED	f	SNP								T		G
ss120010190	PARCsnp_1.07362	PARC_SEQ	INBRED	f	SNP								T		G
ss146183718	ENSMUSSNP2827399	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
ss320123172	CHEV_1_174129809	CHEVERUD	SCREENING_POP	f	SNP													G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31573225					SNP	G	G	G	G	G	T	G	T	T	G	T	G	G	T	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752996	NES13041140	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172027245 () rs orientation: forward

Symbol	Name	Function Class
Pea15a	proliferation and apoptosis adaptor protein 15A	within coordinates
Rr28998	regulatory region 28998	755 bp proximal
Tssr10176	transcription start site region 10176	1442 bp downstream
Tssr10177	transcription start site region 10177	1053 bp downstream
Tssr10178	transcription start site region 10178	1007 bp downstream
Tssr15149	transcription start site region 15149	1914 bp upstream
Tssr15150	transcription start site region 15150	1804 bp upstream
Tssr15151	transcription start site region 15151	1767 bp upstream
Tssr15152	transcription start site region 15152	1617 bp upstream
Tssr15153	transcription start site region 15153	1599 bp upstream
Tssr15154	transcription start site region 15154	1476 bp upstream
Tssr15155	transcription start site region 15155	1335 bp upstream
Tssr15156	transcription start site region 15156	1162 bp upstream
Tssr15157	transcription start site region 15157	1119 bp upstream
Tssr15158	transcription start site region 15158	510 bp upstream
Tssr15159	transcription start site region 15159	471 bp upstream
Tssr15160	transcription start site region 15160	429 bp upstream
Tssr15161	transcription start site region 15161	806 bp downstream
Tssr15162	transcription start site region 15162	863 bp downstream
Tssr15163	transcription start site region 15163	879 bp downstream