rs31573228 SNP Detail

Summary

• ID
  rs31573228
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172026296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGG GTGTTCCCAG GGATGGAGGT
  Y
  GCCAGGCAGG CAGGCAGGCC CATTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss45088381	mCV23615040	ABI	CRAMUS_MOUSE	f	SNP		T	T					C		T
ss49752999	NES13041297	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	C	T		C	T	T	T		C	T	T	T
ss120007286	PARCsnp_1.17721	PARC_SEQ	INBRED	f	SNP								C		T
ss120010186	PARCsnp_1.07360	PARC_SEQ	INBRED	f	SNP								C		T
ss146183707	ENSMUSSNP6060376	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T
ss320123169	CHEV_1_174128860	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs31573228					SNP	T	T	T	T	T	C	T	C	C	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752999	NES13041297	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172026296 () rs orientation: forward

Symbol	Name	Function Class
Pea15a	proliferation and apoptosis adaptor protein 15A	within coordinates
Rr28998	regulatory region 28998	1704 bp proximal
Rr32002	regulatory region 32002	1897 bp distal
Tssr10176	transcription start site region 10176	493 bp downstream
Tssr10177	transcription start site region 10177	104 bp downstream
Tssr10178	transcription start site region 10178	58 bp downstream
Tssr15149	transcription start site region 15149	965 bp upstream
Tssr15150	transcription start site region 15150	855 bp upstream
Tssr15151	transcription start site region 15151	818 bp upstream
Tssr15152	transcription start site region 15152	668 bp upstream
Tssr15153	transcription start site region 15153	650 bp upstream
Tssr15154	transcription start site region 15154	527 bp upstream
Tssr15155	transcription start site region 15155	386 bp upstream
Tssr15156	transcription start site region 15156	213 bp upstream
Tssr15157	transcription start site region 15157	170 bp upstream
Tssr15158	transcription start site region 15158	413 bp downstream
Tssr15159	transcription start site region 15159	465 bp downstream
Tssr15160	transcription start site region 15160	493 bp downstream
Tssr15161	transcription start site region 15161	1755 bp downstream
Tssr15162	transcription start site region 15162	1812 bp downstream
Tssr15163	transcription start site region 15163	1828 bp downstream