rs31573480 SNP Detail

Summary

• ID
  rs31573480
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191178825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACAACAAAA ACTAGAGAGC GTGAAGCACT GGGTAGTAGA
  GCTAATGAAT AACCAGCAAG TTCCATAACC CGCCTTGTGC ACCTGTATCT CAGGGCCTGC
  K
  TTGACAGCAG GGCCTTGGTG GAGGAGGCTG CTGCCAGCAG CTCATTCAGC TAAATCAGTA
  ATAACGTGGG TCTCAGAGCA TCTTCAGCAC TGTGCTCTA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45047076	mCV23930579	ABI	CRAMUS_MOUSE	f	SNP		T						T	G
ss49546426	NES12907232	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T	T	T		G	T	G		T	G	G		G
ss146505972	ENSMUSSNP2892957	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						G
ss320195311	CHEV_1_193270507	CHEVERUD	SCREENING_POP	f	SNP												G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31573480					SNP	G	T	T	T	T	T	T	T	G	T	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49546426	NES12907232	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191178825 () rs orientation: forward

Symbol	Name	Function Class
Gm32200	predicted gene, 32200	within coordinates
Rr372646	regulatory region 372646	within coordinates
Tssr15793	transcription start site region 15793	810 bp upstream