rs31573843 SNP Detail

Summary

• ID
  rs31573843
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104435589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTCAGAT TTTTTAATGT
  AATGATGTCT GCTTTAATCC CAGAACGACA GAAGGCCATT CTGGGATTAA TACTGGGTCC
  CAAAGACTTT GAGCCAAGGG AAAGAGGAAA ACAAGGGAAC ATTTGAAGTT TGCATCTCTG
  TCTTTGCAGC TCTCAGGAAT TAGGGCAGCA CTGAACATTC CACTCCGCAA CAGCCTTTTC
  Y
  CTTCTACATG GAACCCACTT GGAAAGTTTG TCCAAATCCA TAAATGATTA GGCTCAAAGC
  ACACGATAAC TTTTTTTTTG CCTTTGTGAA TAGGTGTATG GTTTCTTTTA ATATTTTCAT
  TTTGTTATTT AAAAAATGTT AAGCCTATGG GCATTGAATA CCAGCACTGG AAGGCTGAGC
  CAGGGAGGTT GGAAGTTAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45547437	mCV24813147	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					T		T
ss46831014	NES10732192	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T		T	T	T	C	T	T	T	T	T
ss135569237	ENSMUSSNP2845699	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31573843					SNP	C	C	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46831014	NES10732192	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104435589 () rs orientation: forward

Symbol	Name	Function Class
A530041M06Rik	RIKEN cDNA A530041M06 gene	1620 bp upstream
Rr582534	regulatory region 582534	1454 bp distal
Rr582535	regulatory region 582535	355 bp distal