rs31574464 SNP Detail

Summary

• ID
  rs31574464
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28391401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTC CTGGAATTCA CTCTGGAGAC
  Y
  GGGTTGGCCT CAAACTCATA AATCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46046725	mCV24575524	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss148635385	ENSMUSSNP6307497	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
ss322125998	CHEV_7_29476995	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31574464					SNP	T	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28391401 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18715	CpG island 18715	1083 bp proximal
Fbxo27	F-box protein 27	873 bp upstream
Rr644337	regulatory region 644337	691 bp proximal
Rr644338	regulatory region 644338	1553 bp proximal
Tssr65494	transcription start site region 65494	840 bp upstream
Tssr65495	transcription start site region 65495	879 bp upstream
Tssr65496	transcription start site region 65496	1027 bp upstream
Tssr65497	transcription start site region 65497	1036 bp upstream
Tssr65498	transcription start site region 65498	1056 bp upstream