rs31574519 SNP Detail

Summary

• ID
  rs31574519
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128517901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGTC TTTGCTTAGA ACAAAAGGAC
  R
  TTGAGAGTCT AAGGACTTCA CAGCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45047484	mCV23203435	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss145462246	ENSMUSSNP4959538	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss319965170	CHEV_1_130486741	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31574519					SNP	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128517901 () rs orientation: forward

Symbol	Name	Function Class
Cpgi697	CpG island 697	620 bp proximal
Cxcr4	C-X-C motif chemokine receptor 4	within coordinates
Rr28453	regulatory region 28453	within coordinates
Rr366855	regulatory region 366855	919 bp upstream
Rr396264	regulatory region 396264	1988 bp upstream
Tssr8536	transcription start site region 8536	790 bp upstream
Tssr8537	transcription start site region 8537	1113 bp upstream
Tssr8538	transcription start site region 8538	1141 bp upstream
Tssr8539	transcription start site region 8539	1155 bp upstream
Tssr13461	transcription start site region 13461	1702 bp upstream
Tssr13462	transcription start site region 13462	1532 bp upstream
Tssr13463	transcription start site region 13463	1432 bp upstream
Tssr13464	transcription start site region 13464	1390 bp upstream
Tssr13465	transcription start site region 13465	1377 bp upstream
Tssr13466	transcription start site region 13466	1306 bp upstream
Tssr13467	transcription start site region 13467	1264 bp upstream
Tssr13468	transcription start site region 13468	1178 bp upstream
Tssr13469	transcription start site region 13469	1124 bp upstream
Tssr13470	transcription start site region 13470	1034 bp upstream
Tssr13471	transcription start site region 13471	962 bp upstream
Tssr13472	transcription start site region 13472	894 bp upstream
Tssr13473	transcription start site region 13473	879 bp upstream
Tssr13474	transcription start site region 13474	818 bp upstream
Tssr13475	transcription start site region 13475	797 bp upstream
Tssr13476	transcription start site region 13476	785 bp upstream
Tssr13477	transcription start site region 13477	719 bp upstream
Tssr13478	transcription start site region 13478	652 bp downstream
Tssr13479	transcription start site region 13479	681 bp downstream
Tssr13480	transcription start site region 13480	1003 bp downstream