rs31575607 SNP Detail

Summary

• ID
  rs31575607
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164268434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGCTCACAA AAAGAAAAAG AAAATCCACG TTTTGATTTG
  ATTTCCTTTG GGGTAGCAAA TATCACGGAA ACAAACTGAC ATGCAAGAGA AACTGAGCAG
  Y
  GTTCATGTCA GCCTTAGGGG ACCCTGGAGA CCAAAGCCAC GCCTATGGAA GGATGGCATT
  GCTTCATTCA TGGTCTGAGA AATAACCGTT CAGAAAAGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45048399	mCV24721494	ABI	CRAMUS_MOUSE	f	SNP	T	T	T					T		C
ss60337231	NES15839819	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		T		T	T	C	T	T	C	T
ss145978685	ENSMUSSNP379708	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31575607					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60337231	NES15839819	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164268434 () rs orientation: forward

Symbol	Name	Function Class
Atp1b1	ATPase, Na+/K+ transporting, beta 1 polypeptide	within coordinates
Rr20253	regulatory region 20253	1034 bp distal
Rr25447	regulatory region 25447	1949 bp distal
Rr25448	regulatory region 25448	1474 bp distal
Rr31656	regulatory region 31656	within coordinates
Tssr14743	transcription start site region 14743	693 bp downstream
Tssr14744	transcription start site region 14744	742 bp downstream