rs3157583 SNP Detail

Summary

• ID
  rs3157583
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:52816992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGTTCCAAT TATCACACTT AGATAATCTA TAGTTGAAGA
  GGAACAATTT CAAAATCATG TTAGATTTCT CCTCACATTC TAAAGGCTAA CTTTCTGGTT
  K
  GAGGGAACTA TTGTTATTAA CACTTGCAAC TGTACTTGTA TTCTATTGCT GTGATAAAAG
  CCATGACCAA AAACTAGTCA TGAGAGGAAA ATATCTATT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss39165486	mCV23549514	ABI	CRAMUS_MOUSE	f	SNP	T				G
ss62391685	NES17240033	PERLEGEN	MM_PANEL2	f	SNP		T	T	T		G	T	G	T		G	G	G		G
ss139509574	ENSMUSSNP6841283	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss324630115	CHEV_14_53199210	CHEVERUD	SCREENING_POP	f	SNP										T				G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs3157583					SNP	T	T	T	T	G	G	T	G	T	T	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62391685	NES17240033	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:52816992 () rs orientation: forward

Symbol	Name	Function Class
Rr491934	regulatory region 491934	896 bp proximal
Rr491935	regulatory region 491935	972 bp proximal
Tcra	T cell receptor alpha chain	within coordinates
Trav3-1	T cell receptor alpha variable 3-1	1227 bp upstream
Tssr125465	transcription start site region 125465	1049 bp upstream