rs31577769 SNP Detail

Summary

• ID
  rs31577769
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172301765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGTT AAAACAAAAC AAACAAACAA
  W
  AACCCTAGGA GGAGCTGGGA GATGC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45048169	mCV23005055	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	T
ss120011340	PARCsnp_1.19748	PARC_SEQ	INBRED	f	SNP			A	T
ss120014410	PARCsnp_1.09779	PARC_SEQ	INBRED	f	SNP			A	T
ss146193190	ENSMUSSNP2213641	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss320125589	CHEV_1_174404329	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31577769					SNP	T	T	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172301765 () rs orientation: forward

Symbol	Name	Function Class
Gm7804	predicted gene 7804	within coordinates
Gm70809	predicted gene, 70809	within coordinates
Gm70814	predicted gene, 70814	within coordinates
Rr396588	regulatory region 396588	860 bp downstream
Rr423578	regulatory region 423578	868 bp proximal
Slamf9	SLAM family member 9	1162 bp upstream
Tssr10198	transcription start site region 10198	1173 bp upstream
Tssr10199	transcription start site region 10199	1189 bp upstream
Tssr10200	transcription start site region 10200	1229 bp upstream
Tssr15219	transcription start site region 15219	967 bp downstream