rs31578403 SNP Detail

Summary

• ID
  rs31578403
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:155092288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TCATAATATA AAACATATGA AGTAAATGTG TAGATCTGGC CTAGCACCCT TGCTGGAGCG
  CACGCTCCTG AGGCCTGAGG TCTGCAGTCT GCGTGCTTCA TGCTGTGCTG TAACCCCGGT
  ATCCAAGATA CTTATTAGCA GGCACCTGAC ACACATTAAC TCACAGATGC CGAGTGATTC
  ACAGGACAGG AGCTAGCACA CACGCTGGAC CTGGCACCCA GGAAGAGCTT CTGGAGGGAC
  GAGGAGAGCT TTTCTCCATT GCTCAACCAA AGCCCCAAAG GAACTTGACC CCAGGGGCTT
  W
  CTGAGGATCC TGAGAGCATA CCTGAGTCTC GACGGCCACT GCCATGGGCC ACGTGGAATC
  CAAAGGTGCC CTGCAGCACA GCGTGTGCTG CAGACACGGC AGCAGGAGGG CTTTCCCAGT
  TAAACAGCCC TGGCCTAGCA CACTGGAGAG CGGACTACTT CTCCCCAGGG CCCAGCAGCA
  CAGACTGCTG AGCTTGCCTT TCCAAGTCAT CCCCTCCCTC CTCTGCCCAC TCTCCCTCCG
  CTGAGCAGAG CCTGGGGACA GCTTCCAAGG GTTCATGTAC TCACACATTC TAGACCATGG
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45048719	mCV24606563	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs31578403					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:155092288 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
BC034090	cDNA sequence BC034090			Intron
				Noncoding-Transcript-Variant
Rr420975	regulatory region 420975			within coordinates
Rr420976	regulatory region 420976			970 bp distal
Rr420977	regulatory region 420977			1499 bp proximal
Rr420978	regulatory region 420978			1836 bp proximal