rs31578697 SNP Detail

Summary

• ID
  rs31578697
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:118572941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCATGGAAC TGTCTCCCTG GAGCTCCAGC CTGGCTGGGC
  ACGGTGAGGG AGACGGGCCG GGCTCTCCGG GCCATGCTGC TGCTCCCACT ACAGGCTGTC
  R
  TCTCCTCAGA CCAGGAGCTG CAGTGGATGG ATGGGAAGCT GCTGTTGAGT TTCTCGCTGG
  ACTCTGCCCC CTCCAGCCGT AGGGTAGGGA TGGGCCGTAG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss48066850	NES11878594	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs31578697					SNP	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48066850	NES11878594	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118572941 () rs orientation: forward

Symbol	Name	Function Class
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit	within coordinates
Cpgi17905	CpG island 17905	1939 bp distal
Gm38887	predicted gene, 38887	176 bp upstream