rs31578854 SNP Detail

Summary

• ID
  rs31578854
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127310702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTGGTTT GGAAAGTCAG
  TTATATCAAA TGATAGTTTG CTGGGGCACA CAGGTGAAAG GATGTCTTGT TAAGCAGACA
  CATGAAAGAA TGTTGTCCTG AAGCAGACAC AGGTGAAAGG TCCCATGATG AAGGAGTAGA
  AATGTGACCC CAGGGTCAGT GGGACACTGA GCATTGGTGT GGTTTGCTCC GCCTTGCTGT
  W
  CTTCCCTAAG AACACGAGTG TATTGGTTCA CCTTACATAC TGTTGTTGAG CTCAACTTGT
  GGTTACACCA CCATTGAGAG AAACCCAGCC AAGAGCTGCT CCTGAGGTTC CTGTGGCAGC
  TGCTGCTTCA GTGGCCTTGG GCCAGTTGGT GAGCCTTGCA GTTTCTTCAG GATTAAACTA
  CAGCTGCTGG TTTGTGCATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46047170	mCV24290416	ABI	CRAMUS_MOUSE	f	SNP	A	T	A	A
ss145882035	ENSMUSSNP506621	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31578854					SNP	A	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127310702 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19761	CpG island 19761	1533 bp proximal
Ctf1	cardiotrophin 1	1206 bp upstream
Rr655878	regulatory region 655878	within coordinates
Rr655879	regulatory region 655879	716 bp proximal
Rr655880	regulatory region 655880	1425 bp proximal
Tssr69270	transcription start site region 69270	1179 bp upstream