rs31578882 SNP Detail

Summary

• ID
  rs31578882
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:136388451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTTATTTTC CATGTGCATT GGTGTGTTTG CTGCATGTGT
  GCCTATGTGA AGGTGTCAGA TCACCTGCAA CTACAGTTAC AGACATTTGT GAGCTGTCAT
  R
  CAGGTGCTGG GAATCGACCC TGTGTCCTCT GGGAGGCTCT TAAGCAAGTG CTCTTCATTG
  CTGAGTCATC TCTTCAGCCC CTGTATGGAC TTCTAGGAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45548347	mCV24276353	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss135936983	ENSMUSSNP3274498	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
ss320974504	CHEV_3_136345654	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31578882					SNP	A	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136388451 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform			Intron
				Noncoding-Transcript-Variant
Rr585842	regulatory region 585842			1800 bp proximal
Tssr35850	transcription start site region 35850			1962 bp downstream