rs31578940 SNP Detail

Summary

• ID
  rs31578940
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:15893354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCATCCTTTG CCCTCCCTTC TCAGCTGCAT CCCCTTCAGC
  CCATCCTTTG TGAGGTAAAC CCGAGTCCCC TGGCCAGACA CTACTTCTCG GTCTTTCTGG
  R
  CACCGAGCCT GATTCTGTCT TCTCGTGTCC CTCCCTCAAG CCACGAACTT CCACCTGTGC
  GCCCAGGTCT TAGAACATCT CCCTAGGTAC CTCAGAGGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46047246	mCV27566807	ABI	CRAMUS_MOUSE	f	SNP		A	A					G	A
ss51880849	NES14893764	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		A	G	A		G	A		A
ss148378175	ENSMUSSNP4391375	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A
ss322108788	CHEV_7_16744778	CHEVERUD	SCREENING_POP	f	SNP												A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31578940					SNP	A	A	A	A	A	A	A	G	A	G	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51880849	NES14893764	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:15893354 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18359	CpG island 18359	119 bp distal
Rr155078	regulatory region 155078	1847 bp proximal
Rr164335	regulatory region 164335	1228 bp proximal
Slc8a2	solute carrier family 8 (sodium/calcium exchanger), member 2	within coordinates
Tssr64587	transcription start site region 64587	755 bp upstream
Tssr64588	transcription start site region 64588	766 bp upstream