rs31579521 SNP Detail

Summary

• ID
  rs31579521
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:118352186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTATATAG CCAGTTTCAG
  ACCAGCCAGG GCTCTAATGA ATGAATGAAT GAATGAATCT ATCCTGAACT TGACTGAGAG
  TAACTTGGCT TCCTAGTATG ATGGTTTCTC AAGCACTCAC AAAACATCAG GGTTAAAGAG
  GACATAAAAA TATAGGAAGC AAGGCAGGAG GCAGAGAGTA ACAGACGGTA GGTGGTCAAC
  R
  ACCCAGTCAG CCAAGGGTAC CACCACCCTC TAATGTAAGA TAGCCTCAGG ATGAGGAAAT
  TCTATCTGAA GGGGATAGAT AATAGAATAG TTTCCATCTT GAAAATAATT TTAAATGTTA
  AGCTAAAAAA TACAGTTTTC ACTTGACCCT TCAGTGGAGA CCCCCTCCAG CCAATTCCAT
  GTTCCTTCTG TGGTAGAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47567281	NES11193204	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31579521					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47567281	NES11193204	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:118352186 () rs orientation: forward

Symbol	Name	Function Class
D8Mit276	DNA segment, Chr 8, Massachusetts Institute of Technology 276	652 bp proximal
Gm64780	predicted gene, 64780	within coordinates
Plcg2	phospholipase C, gamma 2	within coordinates
Rr174396	regulatory region 174396	615 bp proximal
Rr179694	regulatory region 179694	1415 bp proximal
Rr188006	regulatory region 188006	717 bp proximal